NEWS
mmcc 0.0.9.9000
New Features
- Implement dimension amounts for
n_var
, n_iter
and n_chain
#33
- Implement
n_sims
- #50
mmcc 0.0.8.9600
New Features
- Implemented effective sample size diagnostic,
diag_ess
, (#34) which does not aggregate over chains
mmcc 0.0.8.9500
Minor Changes
- Minor speed-ups (1.5x) in
diag_autocorr
gained by pulling the two lapply
calls together and separating the chain and parameter values from the id column simultaneously.
mmcc 0.0.8.9400
New Features
- added Sam's
diag_autocorr
function to calculate autocorrelation.
mcmc_to_dt
is now and S3 method, removing mcmc_to_dt_stan()
, it just works on stan models now. And mcmc_to_dt.stan()
is about 5 times faster.
Minor Changes
- added
example_jags_model
as an example data set to use in package
- added
example_stan_model
as an example data set to use in package
- added tests for
thin_dt()
and glance.dic()
mmcc 0.0.8.9200
New Features
- Add Haran et al's batch means function to diagnostics (#25)
Minor Changes
- Updated to use generics instead of importing broom
- Removed greta vignette as the python/tensorflow build problems were stopping he package from building properly
- added test coverage
mmcc 0.0.7.9000
New Features
- Added
greta
vignette
- Added examples to the thin_dt, glance.mcmc.list, and other functions.
mmcc 0.0.6.9100
New Features
- added draft function for stan - mcmc_to_dt_stan, for cleaning up output from STAN.
mmcc 0.0.6.9001
Minor Changes
mmcc 0.0.5.9001
Minor Changes
- changes name to
mmcc
- added
thin_dt
, to allow post hoc thinning of chains
- updated linear model vignette to show off
thin_dt
with trace plots
mmcc 0.0.5.9000
Minor Changes
- Changes
tidy
summaries to be lowercase.
- Added
broom
to Depends to make tidy.mcmc.list
to work with tidy
, since @importFrom broom tidy
didn't really seem to work, and I want to be able to just call tidy
.
- no longer import from stats
- Updated vignette to use
tidy
instead of tidy.mcmc.list
- Vignette and README style changes in line with tidyverse style.
- Use
snake_case
where possible.
- Added more whitespace to functions.
mmcc 0.0.4
New Features
- New vignette showing linear regression
- Suggests now includes
rjags
and ggplot2
for vignette
- Column selection now uses regular expression matching so that matching on variables from array allows
beta
to extract beta[1,1]
, beta[1,2]
, etc. but not beta.0
.
mmcc 0.0.3
New Features
- Summary of
mcmc.list
now done with a tidy
method
- Can now select which columns are to be tidied/summarised
mcmc_to_dt
can be requested to summarise over all chains or by each chain.
mmcc 0.0.1
New features
- Added
tidy_mcmc
to tidy up mcmc.list
objects
- Added a
NEWS.md
file to track changes to the package.