naniar - Data Structures, Summaries, and Visualisations for Missing Data
Missing values are ubiquitous in data and need to be explored and handled in the initial stages of analysis. 'naniar' provides data structures and functions that facilitate the plotting of missing values and examination of imputations. This allows missing data dependencies to be explored with minimal deviation from the common work patterns of 'ggplot2' and tidy data. The work is fully discussed at Tierney & Cook (2023) <doi:10.18637/jss.v105.i07>.
Last updated 10 months ago
data-visualisationggplot2missing-datamissingnesstidy-data
15.27 score 652 stars 8 dependents 5.0k scripts 24k downloadsvisdat - Preliminary Visualisation of Data
Create preliminary exploratory data visualisations of an entire dataset to identify problems or unexpected features using 'ggplot2'.
Last updated 5 months ago
exploratory-data-analysismissingnesspeer-reviewedropenscivisualisation
12.91 score 453 stars 10 dependents 1.9k scripts 21k downloadsvisdat - Preliminary Visualisation of Data
Create preliminary exploratory data visualisations of an entire dataset to identify problems or unexpected features using 'ggplot2'.
Last updated 5 months ago
exploratory-data-analysismissingnesspeer-reviewedropenscivisualisation
12.88 score 453 stars 10 dependents 1.8k scripts 21k downloadsgreta - Simple and Scalable Statistical Modelling in R
Write statistical models in R and fit them by MCMC and optimisation on CPUs and GPUs, using Google 'TensorFlow'. greta lets you write your own model like in BUGS, JAGS and Stan, except that you write models right in R, it scales well to massive datasets, and it’s easy to extend and build on. See the website for more information, including tutorials, examples, package documentation, and the greta forum.
Last updated 7 days ago
12.41 score 551 stars 6 dependents 358 scripts 825 downloadsgeotargets - 'Targets' Extensions for Geospatial Formats
Provides extensions for various geospatial file formats, such as shapefiles and rasters. Currently provides support for the 'terra' geospatial formats. See the vignettes for worked examples, demonstrations, and explanations of how to use the various package extensions.
Last updated 7 days ago
geospatialpipeliner-targetopiarasterreproducibilityreproducible-researchtargetsvectorworkflow
7.29 score 63 stars 41 scriptsconmat - Builds contact matrices using GAMs and population data
Builds contact matrices using GAMs and population data. This package incorporates data that is copyright Commonwealth of Australia (Australian Electoral Commission and Australian Bureau of Statistics) 2020.
Last updated 24 days ago
contact-matricesinfectious-diseasespopulation-datapublic-health
7.01 score 18 stars 47 scriptsgreta.gp - Gaussian Process Modelling in 'greta'
Provides a syntax to create and combine Gaussian process kernels in 'greta'. You can then them to define either full rank or sparse Gaussian processes. This is an extension to the 'greta' software, Golding (2019) <doi:10.21105/joss.01601>.
Last updated 1 months ago
6.50 score 19 stars 28 scripts 514 downloadssyn - Creates Synonyms From Target Words
Generates synonyms from a given word drawing from a synonym list from the 'moby' project <http://moby-thesaurus.org/>.
Last updated 12 months ago
antonymsozunconf18synonymstext-processingthesaurusunconf
6.37 score 52 stars 2 dependents 30 scripts 220 downloadsmaxcovr - A Set of Tools For Solving The Maximal Covering Location Problem
Solving the "maximal covering location problem" as described by Church can be difficult for users not familiar with linear programming. maxcovr provides functions to make it easy to solve this problem, and tools to calculate facility coverage.
Last updated 30 days ago
distancelinear-programmingcpp
6.05 score 43 stars 43 scriptsgreta.dynamics - Modelling Structured Dynamical Systems in 'greta'
A 'greta' extension for analysing transition matrices and ordinary differential equations representing dynamical systems. Provides functions for analysing transition matrices by iteration, and solving ordinary differential equations. This is an extension to the 'greta' software, Golding (2019) <doi:10.21105/joss.01601>.
Last updated 1 months ago
5.97 score 6 stars 13 scripts 499 downloadsgreta.gam - Generalised Additive Models in 'greta' using 'mgcv'
A 'greta' (Golding (2019) <doi:10.21105/joss.01601>) module that lets you use 'mgcv' smoother functions and formula syntax to define smooth terms for use in a 'greta' model. You can then define your own likelihood to complete the model, and fit it by Markov Chain Monte Carlo (MCMC).
Last updated 7 days ago
5.90 score 8 stars 6 scripts 8 downloadsmmcc - tidy mcmc.list using data.table
Tidy up, diagnose, and visualise your mcmc samples quickly and easily so you can get on with your analysis.
Last updated 3 years ago
4.68 score 24 stars 10 scriptsozroaddeaths - Pulls Data From Australian Road Deaths Database
ozroaddeaths is a package that pulls data from the Australian Road Deaths Database, run by the Bureau of Infrastructure, Transport and Regional Economics (BITRE). This provides basic details of road transport crash fatalities in Australia as reported by the police each month to the State and Territory road safety authorities. The details provided in the database fall into two groups: 1) the circumstances of the crash, for example, date, location, crash type some details regarding the persons killed, for example, age, gender and road user group.
Last updated 2 months ago
ozunconf17unconf
4.62 score 6 stars 7 scriptsbroomstick - Convert Decision Tree Objects into Tidy Data Frames
Convert Decision Tree objects into tidy data frames, by using the framework laid out by the package broom, this means that decision tree output can be easily reshaped, porocessed, and combined with tools like 'dplyr', 'tidyr' and 'ggplot2'. Like the package broom, broomstick provides three S3 generics: tidy, to summarise decision tree specific features - tidy returns the variable importance table; augment adds columns to the original data such as predictions and residuals; and glance, which provides a one-row summary of model-level statistics.
Last updated 1 years ago
broomdecision-treesgbmmachine-learningrandomforestrpartstatistical-learning
3.58 score 28 stars 27 scriptsyahtsee - Yet Another Hierachical Time Series Extension and Expansion
An opinionated approach to building hierarchical time series models in R using INLA and inlabru.
Last updated 3 years ago
3.00 score 2 stars 8 scriptsgreta.distributions - Extends Distributions Available in the 'greta' Package
Provides extra distributions for use with the 'greta' package. These will include distributions such as zero inflated negative binomial, zero inflated poisson, interval censored lognormal, and more.
Last updated 7 days ago
2.78 score 1 stars 1 scriptschaletex - Extract LaTeX packages from TeX files and Install Them
Trying to compile LaTeX files can be frustrating when you need to stop at every attempted compile and install the missing packages. The goal of chaletex is to make it easy to extract packages you need to install from LaTeX. It is named `chaletex` as we want this to be like walking into a Chalet after a big day - a nice, friendly, cozy place for your TeX problems.
Last updated 5 years ago
2.54 score 7 stars 2 scripts